If you are sending invoices (instead of journal entries) to taxomate using QuickBooks, we provide you with the option to record (receive) payments linked to your settlement invoices:
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We have found this to be very helpful in reconciling split settlements (multiple invoices).
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To turn this feature on, head over to Settings > Invoice.
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When you select invoice (rather than journal entries), the option to receive payments will display. Enable this option and we record an invoice payment for each settlement.
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Sometimes when an invoice and credit memo are both present, we will not send payment. Please see this article on how to reconcile.